Confirm identical results with Cox and Mann software - Githubissues

markziemann / mitch_legacy

An R package for multi-dimensional pathway enrichment analysis (legacy repo)

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Confirm identical results with Cox and Mann software #8

Open markziemann opened 5 years ago

markziemann commented 5 years ago

I think there needs to be a broader comparison where the same dataset is analysed by currently existing tools. Would include a real dataset such as HGVPA as well as a simulated one

Cox & Mann method
MGSEA – a multivariate Gene set enrichment analysis
MAVTgsa
MOGSA: integrative single sample gene-set analysis of multiple omics data
MDGSA), involves logistic model regression which allows for many variables (Montaner and Dopazo 2010)

Revisit the evaluation by Tsai and Chen 2009