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marlichimi / beast-mcmc

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Same as Issue 204 happened again in v1.6.x #400

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
I have performed the xml file using beauty 1.5.4. and I’ve constrained
a taxa in the same way that i have done using Beauty 1.5.4., then i
calibrated the TMRCA prior using a normal distribution.

When i run this file in BEAST 1.6.x. the programme said:

WARNING: unexpected element in coalescentTree:startingTree:  tmrca in
constrainedTaxa

Original issue reported on code.google.com by cai...@post.kiz.ac.cn on 19 Sep 2010 at 3:21

GoogleCodeExporter commented 8 years ago 
Sorry I mean have formed the xml file and constrained several taxon using 
Beauti 1.5.4., then i calibrated the TMRCA prior using a normal distribution 
using Beast 1.5.4. 

But when i run the same file using BEAST 1.6.x. the programme said:

Unexpected element in coalescentTree:startingTree:  tmrca in constrainedTaxa, 
tmrca in constrainedTaxa, tmrca in constrainedTaxa, tmrca in constrainedTaxa, 
tmrca in constrainedTaxa, tmrca in constrainedTaxa, tmrca in constrainedTaxa, 
tmrca in constrainedTaxa, tmrca in constrainedTaxa, tmrca in constrainedTaxa, 
tmrca in constrainedTaxa, tmrca in constrainedTaxa, tmrca in constrainedTaxa, 
tmrca in constrainedTaxa

And by the way I found that this program is not compatible with my new 64-bit 
system and JAVA VM, this can be solved by install the 32-bit version Java VM.

Original comment by cai...@post.kiz.ac.cn on 19 Sep 2010 at 3:34

GoogleCodeExporter commented 8 years ago 
Dear User,

Please provide the XML for investigating.

If you use beast.jar in 64-bit system, it should not have any problem.

Thanks,
Walter

Original comment by dong.w.xie@gmail.com on 20 Sep 2010 at 12:04

GoogleCodeExporter commented 8 years ago 
Here is the xml file. Thank you!

Jing

Original comment by cai...@post.kiz.ac.cn on 20 Sep 2010 at 12:32

GoogleCodeExporter commented 8 years ago 
Is it right to ignore this message if I can go on with the analysis? 

I noticed that there is also the same warning message in an internet tutorial 
of BEAST 
(http://molecularevolution.org/resources/activities/beast_activity/primates).

Original comment by cai...@post.kiz.ac.cn on 21 Sep 2010 at 3:22

GoogleCodeExporter commented 8 years ago 
This is the same issue as 403: 
http://code.google.com/p/beast-mcmc/issues/detail?id=403

You can ignore the warning.

Original comment by dev@simon.net.nz on 5 Oct 2010 at 3:43

GoogleCodeExporter commented 8 years ago

Original comment by dong.w.xie@gmail.com on 1 Mar 2011 at 3:55