I have experiementally verified protonated amino acids in my protein and martinize2 is giving error for ASH and HIE residues. Do martinize2 have parameterization of protonated states of ASH and HIE, if yes what is the nomenclature. If no, how do we insert parameterization of ASH and HIE?
I have experiementally verified protonated amino acids in my protein and martinize2 is giving error for ASH and HIE residues. Do martinize2 have parameterization of protonated states of ASH and HIE, if yes what is the nomenclature. If no, how do we insert parameterization of ASH and HIE?
thanks