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marschall-lab / gaftools

General purpose utility related to GAF files
https://gaftools.readthedocs.io/
MIT License
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SNP calling #1

Closed colindaven closed 1 year ago

colindaven commented 1 year ago

Hi,

thanks for your efforts here. Is it in scope in future for this package to call SNPs, or do you know of any SNP calling alternatives to vg call for pangenomes. Especially calling from gaf files.

Thanks

samarendra-pani commented 1 year ago

Hello,

Right now, we have no plans for developing an SNP caller as a part of gaftools. But it is an interesting idea which will be quite useful. We might develop something of the sort in the future.

Thanks.