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marschall-lab / panacus

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
MIT License
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A problem while running panacus-visualize #17

Closed syresbr closed 7 months ago

syresbr commented 7 months ago

I was trying to run panacus-visualize with my data but it gave me this error Traceback (most recent call last): File "/home/gustavo/panacus-0.2.3_linux_x86_64/bin/panacus-visualize", line 16, in <module> from matplotlib.transforms import Bbox ModuleNotFoundError: No module named 'matplotlib'

and in the file is this code from matplotlib.transforms import Bbox And I tried to run it with your example and it got the same error.

Thanks for your time.

danydoerr commented 7 months ago

Thanks for reporting, Gustavo!

I assume you downloaded the binary release. If you install panacus with conda, all required python packages are installed, too. In case of the binary, python dependencies are not resolved -- you must handle these yourself. You can find the list of dependencies in the README (https://github.com/marschall-lab/panacus)