search

marschall-lab / project-male-assembly

HGSVC SIG: targeted chromsome Y assembly
MIT License
7 stars 1 forks source link

map reads to ref chrY (hg38 and T2T) #6

Open ptrebert opened 2 years ago

ptrebert commented 2 years ago

Primary interest: HiFi reads

Requested output by Pille:

read depth, both with and without secondary alignments

ptrebert commented 2 years ago

@pilleh These files are now also produced and copied. Output files contain all secondary alignments. I don't mark this as done as I still have to implement the read depth calculation.