Input requirements for LION to correctly identify Sphingoid bases - Githubissues

martijnmolenaar / lipidontology.com

LION/web | Lipid Ontology enrichment analysis

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Input requirements for LION to correctly identify Sphingoid bases #10

Open JauntyJJS opened 3 years ago

JauntyJJS commented 3 years ago

Hi,

I have tried to input some Sphingoid bases as defined in https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessClassSearch&LMID=LMSP01 .

More specifically, SPBP 16:1;O2 SPBP 17:1;O2 SPBP 18:0;O2 SPBP 18:1;O2 SPBP 18:2;O2 SPBP 19:1;O2 SPBP 20:1;O2

Sphingoid bases are also present in the LION ontology https://bioportal.bioontology.org/ontologies/LION/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FLION_0000076

Unfortunately when I key in these lipids,

It did not got detected as a Sphingoid base

Is there something that I need to do ? Kindly advise

martijnmolenaar commented 3 years ago

Dear JauntyJJS,

I believe the class abbreviations for sphingoid bases are not supported at the moment. We will add it to the list to be included in the next update!