It would be nice with a phylogenetic tree feature based on kmers for quickly visualising how references/genomes are related and how closely or distantly related they are.
This could help define better or more realistics groups for identifying primer pairs.
ie. it could show if any of the genomes in the positive set is too distant from the rest. Thus, removing all viable primer pairs from the results. And vice versa, could show if any of the genomes from the negative set is too closely related to the positive genomes. Thus, removing all viable primer pairs from the results.
It would be nice with a phylogenetic tree feature based on kmers for quickly visualising how references/genomes are related and how closely or distantly related they are. This could help define better or more realistics groups for identifying primer pairs. ie. it could show if any of the genomes in the positive set is too distant from the rest. Thus, removing all viable primer pairs from the results. And vice versa, could show if any of the genomes from the negative set is too closely related to the positive genomes. Thus, removing all viable primer pairs from the results.