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martinfthomsen / rucs2

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Support for specifying accession IDs directly as input #16

Closed martinfthomsen closed 1 year ago

martinfthomsen commented 1 year ago

Please provide support for specifying accessions directly as input for the --positives and --negatives argument.

Like so: docker run --rm -vpwd:/workdir -v $BLASTDB:/blastdb rucs full --positives CP000672.1 ARBW00000000 --negatives JWIZ01 The behaviour should just be to download the samples by providing the accession ID to the download_genomes script and store them in the positives and negatives directory respectively.

martinfthomsen commented 1 year ago

This is resolved in the next release