martinfthomsen / rucs2

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Long run time for jobs with a lot of template material #23

Open martinfthomsen opened 4 months ago

martinfthomsen commented 4 months ago

When running a simple job with one positive and one negative strain with a large genome size of 36Mbases and nearly nothing being filtered, the subsequent FPPP algorithm runs for a very long time as it tries to process all primer pair candidates. Could you add a limit, so that the algorithm runs faster when a lot of template material is available?