to-do list

[martinig]

@martinig

• [x] finalize ISBE abstract
• [x] submit ISBE travel grant
• [x] create taxonomic tree with phylopic images
• [x] save the images for attribution
• [x] add GPS points to each paper
• [x] check five of each confirmation bias types for agreement
• [x] make country map with points at each location
• [x] check for mistakes in species columns
• [x] supplemental material (methods)
• [x] introduction
• [ ] methods - add new stuff
• [ ] results - add new stuff
• [ ] supplemental material (results)
• [ ] figures (overall effect + moderators)
• [ ] tables
• [ ] discussion
• [ ] abstract
• [x] keywords
• [x] verify potential apparent survival papers
• [ ] add Yefeng's scripts to qmd
• [ ] annotate qmd

[martinig]

@Spenser

• [x] author emails for: Spatial organization and recruitment of lynx (Lynx lynx) in a re-introduced population in the Swiss Jura Mountains
• [x] author emails for: Dispersal movements and survival rates of juvenile Mexican Spotted Owls in Northern Arizona
• [x] author emails for: Proximate and ultimate causes of dispersal in the Iberian lynx Lynx pardinus
• [x] author emails for: Emigration to new habitats by voles: The cost of dispersal paradox
• [x] score whether paper stated dispersal was costly in abstract/introduction (confirmation bias)
• [x] flag which studies might be repeats of each other (e.g., Germain et al. 2017a and 2017b) - this is also included in Rayyan under "exclusion" reasons
• [x] flag studies that use mark recapture methods (i.e., possible apparent survival)
• [x] cross-checking records L316-328
• [x] cross-checking records L446-449
• [x] cross-checking records L458-459
• [x] cross-checking records L463-464
• [x] cross-checking records L484-489
• [x] cross-checking records L555-557
• [x] Aim 1 in rayyan mark "Correlates and consequences of breeding dispersal in a migratory songbird" as excluded
• [x] add "label" for "overlapping population [species]" to studies that are using datasets that are have some degree of overlap for included studies only
• [x] cross check Greenwood et al. 1979 and fill in red blanks
• [x] cross check Pusey & Packer 1987 and fill in red blanks
• [x] fill in red blanks for Hines 1986
• [x] count number of studies with unclear sample size (add "unclear sample size" to comments for these papers)
• [x] mark all your "maybes" as included (Aim 1 - 255 articles)
• [x] fix year column because drag function increases numbers (e.g., 2020-2021, 2020-2022, 2020-2023, etc.)
• [x] score full text: Dispersal of the Golden-mantled Ground Squirrel (Callospermophilus lateralis)
• [x] fill in information for: Nguyen et al. 2024
• [x] go over study overlap questions (re: April has to use the same cohort ids for studies with overlapping datasets)
• [ ] confirm "emailed for data" label has an outcome (sent data, never responded, etc.)
• [ ] export rayyan included/excluded full-texts and clean CSV

[martinig]

@itchyshin

• [x] cross-checking records (to be assigned)
• [x] quarto - table, uni-mod, mulit-mod, run
• [x] add interactions - sex species_class, sex fitness_higher_level, sex whose_fitness, sex dispersal_type
• [x] how to do sanity checks for proportion_method2 and percent_method2 (with SD)
• [x] figure out why code won't run in analysis.qmd (line 573)
• [x] fix effect size function needs mending - it is causing errors and problems are now coming up
• [x] go through script to check for errors and delete notes to yourself
• [x] knit
• [x] review methods
• [x] edit and add text to: Calculating effect sizes

[martinig]

@mlagisz

• [x] cross check records that are marked as "yes" in the "needs_another_opinion" column (link to dataset)

[martinig]

@Yefeng0920

• [ ] resolve error: VCV matrix (SN is looking into this)
• [ ] resolve error: effect size direction
• [ ] spp figure
• [ ] sent ARM spp names for significant spp so ARM can find silhouettes
• [ ] leave one species out analysis