There is an issue with counting when doing this within markov

martinjvickers / KAST

Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.

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There is an issue with counting when doing this within markov #39

Closed martinjvickers closed 6 years ago

martinjvickers commented 6 years ago

I think this is something to do with performing a count from within the markov_test function. Strangely this works fine for the old version.

martinjvickers commented 6 years ago

I think I need to have an exception for MarkovOrder = zero
Reverse complement is done on the count....maybe this is part of the issue.

martinjvickers commented 6 years ago

This has now been resolved. The issue was that there are two approaches to creating the markov order model.