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martinjzhang / scDRS

Single-cell disease relevance score (scDRS)
https://martinjzhang.github.io/scDRS/
MIT License
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scdrs perform-downstream: fail to load scDRS full score gz file #101

Closed hopehan12 closed 2 months ago

hopehan12 commented 2 months ago

Hi,

I am trying to run scdrs perform-downstream, but it keeps showing the error that cannot find the full score directory. Could you help me with this?

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scdrs perform-downstream --h5ad-file seurat3.h5ad --score-file outfolder23Aug/HTN.full_score.gz --out-folder outfolder26Aug --group-analysis Celltype

NotADirectoryError: [WinError 267] The directory name is invalid: 'outfolder23Aug/HTN.full_score.gz'

Many thanks!

martinjzhang commented 2 months ago

Have you tried using the absolute path? Also, consider running scDRS in a Unix system. I think there may be some compatibility issue with the Windows system.

hopehan12 commented 2 months ago

Hi Martin,

Yes, I tried using the absolute path but it didn't work. But it works perfectly fine in a Unix system! Thank you very much!