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martinjzhang / scDRS

Single-cell disease relevance score (scDRS)
https://martinjzhang.github.io/scDRS/
MIT License
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turning off fdr correction #66

Closed milospjanic closed 10 months ago

milospjanic commented 1 year ago

Hi, is there any option to turn off fdr correction while plotting scdrs.util.plot_group_stats. I would like to plot on the graph the same pvalues i get with scdrs.method.downstream_group_analysis. Right now i see they are different, way less significant pvals on the plot than in df:stats, i guess probably due to fdr correction. Thanks

KangchengHou commented 1 year ago

Hi you can provide df_fdr_prop, df_assoc_fdr, and df_hetero_fdr to plot_group_stats. All these are #traits x #celltypes matrices. You can look up https://github.com/martinjzhang/scDRS/blob/6ee2161820fc9141eb1f85512659eef1c05d0d66/scdrs/util.py#L469 to converting the dict_df_stats to these matrices.

Let me know if you have success on this.