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martinjzhang / scDRS

Single-cell disease relevance score (scDRS)
https://martinjzhang.github.io/scDRS/
MIT License
109 stars 14 forks source link

add option for specifying FDR threshold in plot_group_stats #75

Closed KangchengHou closed 10 months ago

martinjzhang commented 10 months ago

@KangchengHou this pull request didn't pass the test. Can you take a look? Thank you!

KangchengHou commented 10 months ago

@martinjzhang that is because toy adata only has n_obs = 30, while sc.pp.neighbors was called n_pcs = 40 - probably scanpy recently update their function to check this.

but now this is fixed - see the second commit

martinjzhang commented 10 months ago

Great! This is super fast (as always). Thank you!