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martinjzhang / scDRS

Single-cell disease relevance score (scDRS)
https://martinjzhang.github.io/scDRS/
MIT License
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Is it reasonable to use human' geneset on mouse scRNAseq data? #80

Closed zehualilab closed 8 months ago

zehualilab commented 8 months ago

Like this: scdrs compute-score \ --h5ad-file ~/scDRS/data/mouse.h5ad \ --h5ad-species mouse \ --gs-file ~/scDRS/data/human.gs \ --gs-species human \ --cov-file ~/scDRS/data/cov.tsv \ --flag-filter-data True \ --flag-raw-count True \ --flag-return-ctrl-raw-score False \ --flag-return-ctrl-norm-score True \ --out-folder ~/scDRS/data/

Thank you for any help!

martinjzhang commented 8 months ago

yes it is fine.

zehualilab commented 8 months ago

Thank you very much!