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martinjzhang / scDRS

Single-cell disease relevance score (scDRS)
https://martinjzhang.github.io/scDRS/
MIT License
98 stars 11 forks source link

tcell.facs.annot.h5ad without GENE name #91

Closed Davidseye closed 1 month ago

Davidseye commented 1 month ago

scdrs when i use the Tcell annot h5ad file, I notice that the name of gene is an ID, such as"0610007c21rik" ,not the name we usually use. This lead to no gene can be found in the .gs file and "skipped due to small size (n_gene=0)". I wonder how to solve it or annote it. BTW, I wonder if I get a gene set not from magma, I can only get the order of genes, without z-score, can it be a legal .gs file?

martinjzhang commented 1 month ago

Those seem to be mouse genes. Did you try to specify the h5ad species to be mouse?

Davidseye commented 1 month ago

Those seem to be mouse genes. Did you try to specify the h5ad species to be mouse?

thanks a lot , I made a mistakešŸ˜¢