LandonGetz
commented
1 month ago I also hit this error after following the solutions in #2, but I managed to get around this by reinstalling jax (guided by some suggestions also in #2).
pip install --force-reinstall jax
joerloeffler
hey, after following the steps of reinstalling pyrosetta, I ended up with the following error message when trying to rerun the example locally.
Traceback (most recent call last): File "/home/joe/Software/BindCraft/./bindcraft.py", line 52, in
create_dataframe(trajectory_csv, trajectory_labels)
File "/home/joe/Software/BindCraft/functions/generic_utils.py", line 262, in create_dataframe
df = pd.DataFrame(columns=columns)
File "/home/mojoe/miniforge3/envs/BindCraft/lib/python3.9/site-packages/pandas/core/frame.py", line 876, in init
mgr = dict_to_mgr(
File "/home/joe/miniforge3/envs/BindCraft/lib/python3.9/site-packages/pandas/core/internals/construction.py", line 443, in dict_to_mgr
arrays = Series(data, index=columns, dtype=object)
File "/home/joe/miniforge3/envs/BindCraft/lib/python3.9/site-packages/pandas/core/series.py", line 490, in init
index = ensure_index(index)
File "/home/joe/miniforge3/envs/BindCraft/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 7647, in ensure_index
return Index(index_like, copy=copy, tupleize_cols=False)
File "/home/joe/miniforge3/envs/BindCraft/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 565, in new
arr = sanitize_array(data, None, dtype=dtype, copy=copy)
File "/home/joe/miniforge3/envs/BindCraft/lib/python3.9/site-packages/pandas/core/construction.py", line 654, in sanitize_array
subarr = maybe_convert_platform(data)
File "/home/joe/miniforge3/envs/BindCraft/lib/python3.9/site-packages/pandas/core/dtypes/cast.py", line 138, in maybe_convert_platform
arr = lib.maybe_convert_objects(arr)
File "lib.pyx", line 2538, in pandas._libs.lib.maybe_convert_objects
TypeError: Cannot convert numpy.ndarray to numpy.ndarray
Thank you for your support!