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martinsch / pgmlink

pgmLink - A Tracking-by-Assignment Software
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Error running example in pgmlink-tracking #22

Open sharon7748 opened 7 years ago

sharon7748 commented 7 years ago

I'm getting the following error message running run_test_sequence.sh

HDF5-DIAG: Error detected in HDF5 (1.8.17) thread 0:

000: H5I.c line 2253 in H5Iget_name(): can't retrieve object location

major: Object atom
minor: Can't get value

001: H5Gloc.c line 195 in H5G_loc(): invalid group ID

major: Invalid arguments to routine
minor: Bad value

HDF5-DIAG: Error detected in HDF5 (1.8.17) thread 0:

000: H5I.c line 2253 in H5Iget_name(): can't retrieve object location

major: Object atom
minor: Can't get value

001: H5Gloc.c line 195 in H5G_loc(): invalid group ID

major: Invalid arguments to routine
minor: Bad value

Traceback (most recent call last): File "/home/sharon/Downloads/for_install/pgmlink-joint-segmentation-and-tracking/example/../workflow/workflow.py", line 263, in rf_detection = vigra.learning.RandomForest(options.det_fn, options.det_internal) RuntimeError: basic_string::_M_construct null not valid

Please help. Thank you

ukoethe commented 7 years ago

It is likely that you linked against the wrong version of the HDF5 shared library at runtime (that is, during compilation of pgmlink, another version was used). Please check your installation and LD_LIBRARY_PATH if an unexpected HDF5 library sneaked in.