masai1116 SHARE-seq-alignment issues - Githubissues

masai1116 / SHARE-seq-alignment

pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq

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pyadapter_trim.py", line 147 print seqhead1.strip() ^ SyntaxError: invalid syntax

#5 mechealeth closed 3 years ago
0
PICARD MarkDuplicates error: UMI found with illegal characters. UMIs must match the regular expression ^[ATCGNatcgn-]*$.

#4 isaLa42 opened 3 years ago
2
For RNA-seq R2 reads, what if we didn't filter reads by polyT?

#3 YichaoOU opened 3 years ago
1
what are the purposes of fastp and pyadapter_trim.py?

#2 YichaoOU opened 3 years ago
1