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massonix / HCATonsilData

Provide programmatic access to the tonsil cell atlas datasets
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Protein names with (...) in ADT Assay for tonsil Seurat object cannot be used to subset. #12

Open denvercal1234GitHub opened 1 year ago

denvercal1234GitHub commented 1 year ago

Hi there,

Sorry for another Q.

I downloaded the Seurat objects from Zenodo because the HCATonsilData did not work (issue #9).

However, I encountered another error when attempting to subset cite-seq Seurat object by protein expression. It only worked for protein names that do not have a parenthesis. Yet, VlnPlot, AverageExpression, rownames works fine for these genes. Asked also in https://github.com/satijalab/seurat/issues/6989

Would you mind advising how to proceed?

Thank you for your help.