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massonix / SLOcatoR

SLOcatoR is an R package to annotate single-cell transcriptomes and open chromatin profiles from secondary lymphoid organs using the tonsil atlas as reference
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Using SingleCellExperiment's framework throughout the entire package #9

Open federicomarini opened 1 year ago

federicomarini commented 1 year ago

Refer to this as a way to handle the "switches":

https://github.com/MarcElosua/SPOTlight/blob/devel/R/runDeconvolution.R

federicomarini commented 1 year ago

The dependency is one thing, the other would be to cleverly swap based on the object provided.

Could definitely take out some lessons learned from SPOTlight.