The Lineage Registration plugin currently uses cell division directions to identify and pair cells between two embryos.
But for Macrostomum the division directions don't appear to be so much preserved.
Instead by looking on the TrackScheme one can easily identify certain cells, based on the cell division pattern and the time between cell division. The tree matching algorithm implemented by @stefanhahmann, uses exactly this information, to match two lineage trees. We can use the tree matching algorithm in the lineage registration plugin to register lineages rather than using division directions?
User Story
The Lineage Registration plugin currently uses cell division directions to identify and pair cells between two embryos. But for Macrostomum the division directions don't appear to be so much preserved.
Instead by looking on the TrackScheme one can easily identify certain cells, based on the cell division pattern and the time between cell division. The tree matching algorithm implemented by @stefanhahmann, uses exactly this information, to match two lineage trees. We can use the tree matching algorithm in the lineage registration plugin to register lineages rather than using division directions?