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mastrof
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MicrobeAgents.jl
Agent-based modeling of microbial motile behavior via Agents.jl
MIT License
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Motility constructors kwargs
#94
mastrof
opened
6 days ago
1
Fix rotation bug
#93
mastrof
opened
1 week ago
1
Fix default distribution of reorientation angles in 3D
#92
mastrof
opened
1 week ago
0
Motility constructors should take kwargs
#91
mastrof
opened
1 week ago
0
Use dispatch instead of manual branching
#90
Tortar
closed
1 week ago
6
Export `abmtimestep` function
#89
mastrof
closed
4 months ago
0
Chemotaxis tests
#88
mastrof
closed
4 months ago
0
Fix `random_velocity`
#87
mastrof
closed
4 months ago
0
Api fixes
#86
mastrof
closed
4 months ago
0
`random_velocity` is not uniformly distributed in `D=3`
#85
mastrof
closed
4 months ago
0
try workflows update
#84
mastrof
closed
4 months ago
0
New chemotaxis model: `SonMenolascina`
#83
mastrof
closed
4 months ago
0
New Motility interface
#82
mastrof
closed
4 months ago
1
Replace `:step` with `:time` in dataframes
#81
mastrof
closed
4 months ago
0
Replace `:step` with `:time` in analysis submodule
#80
mastrof
closed
4 months ago
0
fix wrong function call in `driftvelocity_point!`
#79
mastrof
closed
5 months ago
0
Better motility implementation
#78
mastrof
closed
4 months ago
2
Tumbles of finite duration
#77
mastrof
closed
4 months ago
0
Agents v6
#76
mastrof
closed
6 months ago
1
update docstrings and api page of the docs
#75
mastrof
closed
7 months ago
0
Export `chemoattractant` api function
#74
mastrof
closed
7 months ago
0
Use explicit formula for 2D rotations, quaternions for 3D rotations
#73
mastrof
closed
7 months ago
0
Internally convert ABM propetries to `NamedTuple` and define chemoattractant as a struct
#72
mastrof
closed
7 months ago
1
use `abmrng` in chemotaxis models
#71
mastrof
closed
7 months ago
0
Use ABM's random number generator in chemotaxis models
#70
mastrof
closed
7 months ago
0
use `affect!` as ABM property
#69
mastrof
closed
7 months ago
0
replace deprecated `add_agent_pos!` with `add_agent_own_pos!`
#68
mastrof
closed
7 months ago
0
update tests on postprocessing, acf, msd; comment out turn detection …
#67
mastrof
closed
7 months ago
0
Add example: drift in exponential ramp with brumley model
#66
mastrof
closed
9 months ago
0
Analysis submodule
#65
mastrof
closed
9 months ago
0
Update docs and use Literate.jl
#64
mastrof
closed
9 months ago
0
Remove `ChainedFunction`
#63
mastrof
closed
9 months ago
0
Simplify motility types
#62
mastrof
closed
9 months ago
0
Use new Agents API function `abmtime` instead of manual time counter
#61
mastrof
closed
9 months ago
0
Deprecate `UnremovableABM`
#60
mastrof
closed
11 months ago
0
Remove leftover tuple conversions
#59
mastrof
closed
11 months ago
0
Simple stepping benchmarks
#58
mastrof
closed
11 months ago
0
Benchmarks
#57
mastrof
closed
11 months ago
0
Add type parameter for motility
#56
mastrof
closed
9 months ago
2
Implement an abstract `Chemotaxis` type to be used as field in `Microbe`
#55
mastrof
opened
1 year ago
1
Implement chemotaxis model from Tu, Shimizu, Berg 2008 PNAS
#54
mastrof
opened
1 year ago
0
Update to Agents v6
#53
mastrof
closed
11 months ago
1
Use and reexport Agents.jl API functions to access model properties
#52
mastrof
closed
11 months ago
0
TagBot trigger issue
#51
JuliaTagBot
closed
1 year ago
6
Rework microbe type definitions using `@agent` macro
#50
mastrof
closed
11 months ago
0
Registration
#49
mastrof
closed
1 year ago
1
Update docs
#48
mastrof
closed
1 year ago
1
Chemotaxis
#47
mastrof
closed
1 year ago
1
Implement a `brownian_motion!` function
#46
mastrof
opened
1 year ago
1
Implement steric interactions between microbes
#45
mastrof
opened
1 year ago
3
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