Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"
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Issues about Pearson residual calculation in contingency tables #3
Dear authors,
After reading the results and methods of this paper, I felt confused about the Pearson residual calculation. In Figure 2A, the FDR of each cell type was calculated but no detailed methods about it. How did you calculate the p-value for each cell type? Did you use Partitions of method or other test methods? I am interested in it. Could you help me?
Many thanks in advance!
Dear authors, After reading the results and methods of this paper, I felt confused about the Pearson residual calculation. In Figure 2A, the FDR of each cell type was calculated but no detailed methods about it. How did you calculate the p-value for each cell type? Did you use Partitions of method or other test methods? I am interested in it. Could you help me? Many thanks in advance!