Bump `ruff` and fix errors

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 83.33333% with 1 lines in your changes are missing coverage. Please review.

Project coverage is 99.42%. Comparing base (3abce79) to head (7215d42). Report is 3 commits behind head on main.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #593 +/- ## ========================================== - Coverage 99.42% 99.42% -0.01% ========================================== Files 21 21 Lines 1570 1568 -2 Branches 426 425 -1 ========================================== - Hits 1561 1559 -2 Misses 9 9 ``` | [Files](https://app.codecov.io/gh/materialsproject/jobflow/pull/593?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=materialsproject) | Coverage Δ | | |---|---|---| | [src/jobflow/core/flow.py](https://app.codecov.io/gh/materialsproject/jobflow/pull/593?src=pr&el=tree&filepath=src%2Fjobflow%2Fcore%2Fflow.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=materialsproject#diff-c3JjL2pvYmZsb3cvY29yZS9mbG93LnB5) | `100.00% <100.00%> (ø)` | | | [src/jobflow/core/job.py](https://app.codecov.io/gh/materialsproject/jobflow/pull/593?src=pr&el=tree&filepath=src%2Fjobflow%2Fcore%2Fjob.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=materialsproject#diff-c3JjL2pvYmZsb3cvY29yZS9qb2IucHk=) | `100.00% <100.00%> (ø)` | | | [src/jobflow/core/maker.py](https://app.codecov.io/gh/materialsproject/jobflow/pull/593?src=pr&el=tree&filepath=src%2Fjobflow%2Fcore%2Fmaker.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=materialsproject#diff-c3JjL2pvYmZsb3cvY29yZS9tYWtlci5weQ==) | `100.00% <100.00%> (ø)` | | | [src/jobflow/core/reference.py](https://app.codecov.io/gh/materialsproject/jobflow/pull/593?src=pr&el=tree&filepath=src%2Fjobflow%2Fcore%2Freference.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=materialsproject#diff-c3JjL2pvYmZsb3cvY29yZS9yZWZlcmVuY2UucHk=) | `100.00% <100.00%> (ø)` | | | [src/jobflow/utils/uid.py](https://app.codecov.io/gh/materialsproject/jobflow/pull/593?src=pr&el=tree&filepath=src%2Fjobflow%2Futils%2Fuid.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=materialsproject#diff-c3JjL2pvYmZsb3cvdXRpbHMvdWlkLnB5) | `81.57% <0.00%> (ø)` | |