search

mathLab / PyGeM

Python Geometrical Morphing
http://mathlab.github.io/PyGeM/
Other
342 stars 119 forks source link

Installation..problem with GLIBCXX_3.4.21 #170

Closed sshman3 closed 4 years ago

sshman3 commented 4 years ago

Hello, I try to install PyGem..with following this steps on CentOS7:

1) install conda 2) conda create --name gempy36 python=3.6 3) conda activate gempy36 4) conda install -c conda-forge -c dlr-sc -c pythonocc -c oce pythonocc-core==0.17 python=3.6 5) python -m pip install alla packages ( numpy, scipy, matplotlib, vtk, numpy-stl, sphinx and nose) 6) python test.py

!! Error..with :

ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/_BRep.so)

====================================================================== ERROR: Failure: ModuleNotFoundError (No module named '_BRep')

Traceback (most recent call last): File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 18, in swig_import_helper return importlib.import_module(mname) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 994, in _gcd_import File "", line 971, in _find_and_load File "", line 955, in _find_and_load_unlocked File "", line 658, in _load_unlocked File "", line 571, in module_from_spec File "", line 922, in create_module File "", line 219, in _call_with_frames_removed ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/_BRep.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/imp.py", line 235, in load_module return load_source(name, filename, file) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/imp.py", line 172, in load_source module = _load(spec) File "", line 684, in _load File "", line 665, in _load_unlocked File "", line 678, in exec_module File "", line 219, in _call_with_frames_removed File "/home/gghe/Py/PyGeM/tests/test_stlhandler.py", line 3, in import pygem.stlhandler as sh File "/home/gghe/Py/PyGeM/pygem/init.py", line 19, in from .nurbshandler import NurbsHandler File "/home/gghe/Py/PyGeM/pygem/nurbshandler.py", line 9, in from OCC.BRep import BRep_Tool, BRep_Builder, BRep_Tool_Curve File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 21, in _BRep = swig_import_helper() File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 20, in swig_import_helper return importlib.import_module('_BRep') File "/home/gghe/.conda/envs/gempy36/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) ModuleNotFoundError: No module named '_BRep'

====================================================================== ERROR: Failure: ModuleNotFoundError (No module named '_BRep')

Traceback (most recent call last): File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 18, in swig_import_helper return importlib.import_module(mname) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 994, in _gcd_import File "", line 971, in _find_and_load File "", line 955, in _find_and_load_unlocked File "", line 658, in _load_unlocked File "", line 571, in module_from_spec File "", line 922, in create_module File "", line 219, in _call_with_frames_removed ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/_BRep.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/imp.py", line 235, in load_module return load_source(name, filename, file) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/imp.py", line 172, in load_source module = _load(spec) File "", line 684, in _load File "", line 665, in _load_unlocked File "", line 678, in exec_module File "", line 219, in _call_with_frames_removed File "/home/gghe/Py/PyGeM/tests/test_unvhandler.py", line 3, in import pygem.unvhandler as uh File "/home/gghe/Py/PyGeM/pygem/init.py", line 19, in from .nurbshandler import NurbsHandler File "/home/gghe/Py/PyGeM/pygem/nurbshandler.py", line 9, in from OCC.BRep import BRep_Tool, BRep_Builder, BRep_Tool_Curve File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 21, in _BRep = swig_import_helper() File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 20, in swig_import_helper return importlib.import_module('_BRep') File "/home/gghe/.conda/envs/gempy36/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) ModuleNotFoundError: No module named '_BRep'

====================================================================== ERROR: Failure: ModuleNotFoundError (No module named '_BRep')

Traceback (most recent call last): File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 18, in swig_import_helper return importlib.import_module(mname) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 994, in _gcd_import File "", line 971, in _find_and_load File "", line 955, in _find_and_load_unlocked File "", line 658, in _load_unlocked File "", line 571, in module_from_spec File "", line 922, in create_module File "", line 219, in _call_with_frames_removed ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/_BRep.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/imp.py", line 235, in load_module return load_source(name, filename, file) File "/home/gghe/.conda/envs/gempy36/lib/python3.6/imp.py", line 172, in load_source module = _load(spec) File "", line 684, in _load File "", line 665, in _load_unlocked File "", line 678, in exec_module File "", line 219, in _call_with_frames_removed File "/home/gghe/Py/PyGeM/tests/test_vtkhandler.py", line 3, in import pygem.vtkhandler as vh File "/home/gghe/Py/PyGeM/pygem/init.py", line 19, in from .nurbshandler import NurbsHandler File "/home/gghe/Py/PyGeM/pygem/nurbshandler.py", line 9, in from OCC.BRep import BRep_Tool, BRep_Builder, BRep_Tool_Curve File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 21, in _BRep = swig_import_helper() File "/home/gghe/.conda/envs/gempy36/lib/python3.6/site-packages/OCC/BRep.py", line 20, in swig_import_helper return importlib.import_module('_BRep') File "/home/gghe/.conda/envs/gempy36/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) ModuleNotFoundError: No module named '_BRep'

Ran 28 tests in 0.099s

FAILED (errors=28)

any suggestions..please?

Cheers, David

mtezzele commented 4 years ago

Hi @sshman3, sorry for the late response. I suggest you to install all the dependencies with conda. This way it will automatically find all the compatible versions. Let us know if this helps.