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mathesong / bloodstream

A PET BIDS blood-processing tool
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Unable to Run Docker Version as User #16

Open bendhouseart opened 5 months ago

bendhouseart commented 5 months ago

When running bloodstream in docker with the following on ubuntu 22 LTS:

docker run -v $HOME/ds004869:/data/ --user $(id -u):$(id -g) bloodstream

I get the following:

156/157 [sessioninfo]                
157/157                              
Error in file(con, "w") : cannot open the connection
Calls: bloodstream ... <Anonymous> -> <Anonymous> -> write_utf8 -> writeLines -> file
In addition: Warning message:
In file(con, "w") : cannot open file 'template.knit.md': Permission denied
bendhouseart commented 5 months ago

I can probably fix this, but I did want to make a note of it before I forgot.