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mathren / CE_accretors

Study the impact of previous RLOF mass transfer on the binding energy of the accretor and implications for the common envelope in the evolution of isolated GW progenitors
MIT License
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build fails #1

Open krosenfeld-IDM opened 1 year ago

krosenfeld-IDM commented 1 year ago

When I try to build the article locally following the instructions in the README I get the following output and error:

(syw) krosenfeld@ubuntu:~/projects/CE_accretors$ showyourwork build                                                                                       Building DAG of jobs...                                                                                                                                   Your conda installation is not configured to use strict channel priorities. This is however crucial for having robust and correct environments (for details, see https://conda-forge.org/docs/user/tipsandtricks.html). Please consider to configure strict priorities by executing 'conda config --set channel_priority strict'.                                                                                                                                             Removing incomplete Conda environment /home/krosenfeld/mambaforge/envs/syw/lib/python3.9/site-packages/showyourwork/workflow/envs/tectonic.yml...         Creating conda environment /home/krosenfeld/mambaforge/envs/syw/lib/python3.9/site-packages/showyourwork/workflow/envs/tectonic.yml...                    Downloading and installing remote packages.                                                                                                               Environment for /home/krosenfeld/mambaforge/envs/syw/lib/python3.9/site-packages/showyourwork/workflow/envs/tectonic.yml created (location: .snakemake/conda/40829a44e20adc27d454c7762fbfd689_)                                                                                                                     Using shell: /usr/bin/bash                                                                                                                                Provided cores: 1 (use --cores to define parallelism)                                                                                                     Rules claiming more threads will be scaled down.                                                                                                          Job stats:                                                                                                                                                job                      count    min threads    max threads                                                                                              ---------------------  -------  -------------  -------------                                                                                              syw__main                    1              1              1                                                                                              syw__preprocess              1              1              1                                                                                              syw__preprocess_setup        1              1              1                                                                                              syw__preprocess_xml          1              1              1                                                                                              total                        4              1              1                                                                                                                                                                                                                                                        Select jobs to execute...                                                                                                                                                                                                                                                                                           [Mon Aug 28 19:55:38 2023]                                                                                                                                Job 3: Preprocess: Setting up...                                                                                                                          Reason: Missing output files: /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/CE_accretors.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/listofitems.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/xstring.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/xstring.sty, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/lineno.sty, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork.otf, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork-logo.pdf                                                                                                                                                                    Preprocess: Setting up...                                                                                                                                 [Mon Aug 28 19:55:39 2023]                                                                                                                                Finished job 3.                                                                                                                                           1 of 4 steps (25%) done                                                                                                                                   Select jobs to execute...                                                                                                                                                                                                                                                                                           [Mon Aug 28 19:55:39 2023]                                                                                                                                Job 2: Preprocess: Generating XML tree...                                                                                                                 Reason: Missing output files: /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork.xml; Input files updated by another job: /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/CE_accretors.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/listofitems.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/xstring.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/lineno.sty, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/xstring.sty, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork.tex, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork.otf, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork-logo.pdf

Preprocess: Generating XML tree...
Activating conda environment: .snakemake/conda/40829a44e20adc27d454c7762fbfd689_
warning: CE_accretors.tex:203: Overfull \hbox (10.882pt too wide) in paragraph at lines 203--203
warning: CE_accretors.tex:636: Underfull \hbox (badness 10000) in paragraph at lines 636--636
warning: CE_accretors.tex:636: Overfull \hbox (10.882pt too wide) in paragraph at lines 636--636
warning: CE_accretors.tex:738: Overfull \hbox (10.882pt too wide) in paragraph at lines 738--738
warning: CE_accretors.tex:826: Underfull \hbox (badness 1874) in paragraph at lines 800--826
warning: warnings were issued by the TeX engine; use --print and/or --keep-logs for details.
[Mon Aug 28 19:56:17 2023]
Finished job 2.
2 of 4 steps (50%) done
Select jobs to execute...

[Mon Aug 28 19:56:17 2023]
Job 1: Preprocess: Setting up the workflow...
Reason: Missing output files: .showyourwork/config.json; Input files updated by another job: /home/krosenfeld/projects/CE_accretors/.showyourwork/preprocess/showyourwork.xml

Preprocess: Setting up the workflow...
User is not authenticated to edit 10.5281/zenodo.7343715.
[Mon Aug 28 19:56:19 2023]
Finished job 1.
3 of 4 steps (75%) done
Select jobs to execute...

[Mon Aug 28 19:56:19 2023]
localrule syw__main:
    input: .showyourwork/config.json
    jobid: 0
    reason: Input files updated by another job: .showyourwork/config.json
    resources: tmpdir=/tmp

[Mon Aug 28 19:56:19 2023]
Finished job 0.
4 of 4 steps (100%) done
Complete log: .snakemake/log/2023-08-28T195448.996396.snakemake.log
User is not authenticated to edit 10.5281/zenodo.7343715.
User is not authenticated to edit 10.5072/zenodo.1098370.
Building DAG of jobs...
ChildIOException:
File/directory is a child to another output:
('/home/krosenfeld/projects/CE_accretors/.showyourwork/compile', syw__compile_setup)
('/home/krosenfeld/projects/CE_accretors/.showyourwork/compile/CE_accretors.pdf', syw__compile_pdf)
ChildIOException:
File/directory is a child to another output:
('/home/krosenfeld/projects/CE_accretors/.showyourwork/compile', syw__compile_setup)
('/home/krosenfeld/projects/CE_accretors/.showyourwork/compile/CE_accretors.pdf', syw__compile_pdf)

I am on a Linux machine (Ubuntu 22.04.2) using showyourwork 0.4.4.dev4+gacd9a28.

mathren commented 1 year ago

Hi! Thanks for trying to build the article locally and reporting an issue.

First, I noticed you are using a much more recent version of showyourwork compared to what was available at the time of writing this. I used the version from the commit cadb4086dd2a46cb68e6acffa73c2f7976e6d64d of the main branch of showyourwork (see version in showyourwork.yml).

There is no guarantee that newer showyourwork versions will work in the same way or at all, and I am indeed able to reproduce your error with a recent showyourwork. You can install the specific version of showyourwork needed by cloning that repo, checking out the commit above, and installing (after activating the conda environment you will use to build the paper) it with python setup.py install from within the newly cloned folder.

After doing this, I get:

showyourwork --version
0.3.1.dev35+gcadb408

and typing showyourwork in the CE_accretors folder I can produce the manuscript locally.

krosenfeld-IDM commented 1 year ago

Hi @mathren - thanks for the detailed instructions. I tried installing the corresponding version of showyourwork using pip:

$ pip install git+https://github.com/showyourwork/showyourwork.git@cadb4086dd2a46cb68e6acffa73c2f7976e6d64d

which looks good:

$ showyourwork --version
0.3.1.dev35+gcadb408

but the build still fails :

$ showyourwork
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Rules claiming more threads will be scaled down.
Traceback (most recent call last):
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/__init__.py", line 701, in snakemake
    success = workflow.execute(
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/workflow.py", line 1060, in execute
    logger.run_info("\n".join(dag.stats()))
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/dag.py", line 2191, in stats
    yield tabulate(rows, headers="keys")
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 2048, in tabulate
    list_of_lists, headers = _normalize_tabular_data(
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 1471, in _normalize_tabular_data
    rows = list(map(lambda r: r if _is_separating_line(r) else list(r), rows))
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 1471, in <lambda>
    rows = list(map(lambda r: r if _is_separating_line(r) else list(r), rows))
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 107, in _is_separating_line
    (len(row) >= 1 and row[0] == SEPARATING_LINE)
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/rules.py", line 1138, in __eq__
    return self.name == other.name and self.output == other.output
AttributeError: 'str' object has no attribute 'name'

Here is the environment:

# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
appdirs                   1.4.4                    pypi_0    pypi
arrow                     1.2.3                    pypi_0    pypi
beautifulsoup4            4.12.2                   pypi_0    pypi
binaryornot               0.4.4                    pypi_0    pypi
bzip2                     1.0.8                h7f98852_4    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cachecontrol              0.12.11                  pypi_0    pypi
certifi                   2023.7.22                pypi_0    pypi
chardet                   5.2.0                    pypi_0    pypi
charset-normalizer        3.2.0                    pypi_0    pypi
click                     8.1.7                    pypi_0    pypi
cookiecutter              2.3.1                    pypi_0    pypi
distro                    1.8.0                    pypi_0    pypi
feedparser                6.0.10                   pypi_0    pypi
idna                      3.4                      pypi_0    pypi
jinja2                    3.1.2                    pypi_0    pypi
lastversion               3.3.2                    pypi_0    pypi
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 13.2.0               h807b86a_2    conda-forge
libgomp                   13.2.0               h807b86a_2    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libsqlite                 3.43.0               h2797004_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
lockfile                  0.12.2                   pypi_0    pypi
markdown-it-py            3.0.0                    pypi_0    pypi
markupsafe                2.1.3                    pypi_0    pypi
mdurl                     0.1.2                    pypi_0    pypi
msgpack                   1.0.6                    pypi_0    pypi
ncurses                   6.4                  hcb278e6_0    conda-forge
openssl                   3.1.3                hd590300_0    conda-forge
packaging                 23.1                     pypi_0    pypi
pip                       23.2.1             pyhd8ed1ab_0    conda-forge
pygments                  2.16.1                   pypi_0    pypi
python                    3.9.18          h0755675_0_cpython    conda-forge
python-dateutil           2.8.2                    pypi_0    pypi
python-slugify            8.0.1                    pypi_0    pypi
pyyaml                    6.0.1                    pypi_0    pypi
readline                  8.2                  h8228510_1    conda-forge
requests                  2.31.0                   pypi_0    pypi
rich                      13.5.3                   pypi_0    pypi
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
setuptools-scm            8.0.3                    pypi_0    pypi
sgmllib3k                 1.0.0                    pypi_0    pypi
showyourwork              0.3.1.dev35+gcadb408          pypi_0    pypi
six                       1.16.0                   pypi_0    pypi
soupsieve                 2.5                      pypi_0    pypi
text-unidecode            1.3                      pypi_0    pypi
tk                        8.6.13               h2797004_0    conda-forge
tomli                     2.0.1                    pypi_0    pypi
tqdm                      4.66.1                   pypi_0    pypi
typing-extensions         4.8.0                    pypi_0    pypi
tzdata                    2023c                h71feb2d_0    conda-forge
urllib3                   1.26.16                  pypi_0    pypi
wheel                     0.41.2             pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
mathren commented 1 year ago

mmh, that looks like a snakemake incompatibility error (see e.g., https://github.com/snakemake/snakemake/issues/1899). You may need to configure the conda priority to strict.

On my workstation, where the build of the last commit works locally for me, conda list outputs something different than your environment:

_libgcc_mutex             0.1                        main  
_openmp_mutex             5.1                       1_gnu  
appdirs                   1.4.4                    pypi_0    pypi
arrow                     1.2.3                    pypi_0    pypi
beautifulsoup4            4.12.2                   pypi_0    pypi
binaryornot               0.4.4                    pypi_0    pypi
blas                      1.0                         mkl  
ca-certificates           2023.05.30           h06a4308_0  
cachecontrol              0.12.11                  pypi_0    pypi
certifi                   2023.7.22                pypi_0    pypi
chardet                   5.2.0                    pypi_0    pypi
charset-normalizer        3.2.0                    pypi_0    pypi
click                     8.1.7                    pypi_0    pypi
compare-workdir           2.0                      pypi_0    pypi
contourpy                 1.1.0                    pypi_0    pypi
cookiecutter              2.3.0                    pypi_0    pypi
cycler                    0.11.0                   pypi_0    pypi
distro                    1.8.0                    pypi_0    pypi
feedparser                6.0.10                   pypi_0    pypi
fonttools                 4.42.1                   pypi_0    pypi
idna                      3.4                      pypi_0    pypi
importlib-resources       6.0.1                    pypi_0    pypi
intel-openmp              2021.4.0          h06a4308_3561  
jinja2                    3.1.2                    pypi_0    pypi
joblib                    1.1.0              pyhd3eb1b0_0  
kiwisolver                1.4.5                    pypi_0    pypi
lastversion               3.0.1                    pypi_0    pypi
ld_impl_linux-64          2.38                 h1181459_1  
libffi                    3.4.4                h6a678d5_0  
libgcc-ng                 11.2.0               h1234567_1  
libgfortran-ng            7.5.0               ha8ba4b0_17  
libgfortran4              7.5.0               ha8ba4b0_17  
libgomp                   11.2.0               h1234567_1  
libstdcxx-ng              11.2.0               h1234567_1  
lockfile                  0.12.2                   pypi_0    pypi
markdown-it-py            3.0.0                    pypi_0    pypi
markupsafe                2.1.3                    pypi_0    pypi
matplotlib                3.7.2                    pypi_0    pypi
mdurl                     0.1.2                    pypi_0    pypi
mkl                       2021.4.0           h06a4308_640  
mkl-service               2.4.0            py39h7f8727e_0  
mkl_fft                   1.3.1            py39hd3c417c_0  
mkl_random                1.2.2            py39h51133e4_0  
msgpack                   1.0.5                    pypi_0    pypi
ncurses                   6.4                  h6a678d5_0  
numpy                     1.20.1           py39h93e21f0_0  
numpy-base                1.20.1           py39h7d8b39e_0  
openssl                   3.0.10               h7f8727e_2  
packaging                 23.1                     pypi_0    pypi
pillow                    10.0.0                   pypi_0    pypi
pip                       23.2.1           py39h06a4308_0  
pygments                  2.16.1                   pypi_0    pypi
pyparsing                 3.0.9                    pypi_0    pypi
python                    3.9.17               h955ad1f_0  
python-dateutil           2.8.2                    pypi_0    pypi
python-slugify            8.0.1                    pypi_0    pypi
pyyaml                    6.0.1                    pypi_0    pypi
readline                  8.2                  h5eee18b_0  
requests                  2.31.0                   pypi_0    pypi
rich                      13.5.2                   pypi_0    pypi
scipy                     1.7.1            py39h292c36d_2  
setuptools                68.0.0           py39h06a4308_0  
showyourwork              0.3.1.dev35+gcadb408          pypi_0    pypi
six                       1.16.0             pyhd3eb1b0_1  
soupsieve                 2.5                      pypi_0    pypi
sqlite                    3.41.2               h5eee18b_0  
termcolor                 1.1.0                    pypi_0    pypi
text-unidecode            1.3                      pypi_0    pypi
tk                        8.6.12               h1ccaba5_0  
tqdm                      4.66.1                   pypi_0    pypi
tzdata                    2023c                h04d1e81_0  
urllib3                   1.26.16                  pypi_0    pypi
wheel                     0.38.4           py39h06a4308_0  
xz                        5.4.2                h5eee18b_0  
zipp                      3.16.2                   pypi_0    pypi
zlib                      1.2.13               h5eee18b_0
krosenfeld-IDM commented 1 year ago

Bizarre. Using the same version of python, setting channel priority to strict with the defaults channel my environment now looks similar to yours:

# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main
_openmp_mutex             5.1                       1_gnu
appdirs                   1.4.4                    pypi_0    pypi
arrow                     1.2.3                    pypi_0    pypi
beautifulsoup4            4.12.2                   pypi_0    pypi
binaryornot               0.4.4                    pypi_0    pypi
ca-certificates           2023.08.22           h06a4308_0
cachecontrol              0.12.11                  pypi_0    pypi
certifi                   2023.7.22                pypi_0    pypi
chardet                   5.2.0                    pypi_0    pypi
charset-normalizer        3.2.0                    pypi_0    pypi
click                     8.1.7                    pypi_0    pypi
cookiecutter              2.3.1                    pypi_0    pypi
distro                    1.8.0                    pypi_0    pypi
feedparser                6.0.10                   pypi_0    pypi
idna                      3.4                      pypi_0    pypi
jinja2                    3.1.2                    pypi_0    pypi
lastversion               3.3.2                    pypi_0    pypi
ld_impl_linux-64          2.38                 h1181459_1
libffi                    3.4.4                h6a678d5_0
libgcc-ng                 11.2.0               h1234567_1
libgomp                   11.2.0               h1234567_1
libstdcxx-ng              11.2.0               h1234567_1
lockfile                  0.12.2                   pypi_0    pypi
markdown-it-py            3.0.0                    pypi_0    pypi
markupsafe                2.1.3                    pypi_0    pypi
mdurl                     0.1.2                    pypi_0    pypi
msgpack                   1.0.6                    pypi_0    pypi
ncurses                   6.4                  h6a678d5_0
openssl                   3.0.11               h7f8727e_2
packaging                 23.1                     pypi_0    pypi
pip                       23.2.1           py39h06a4308_0
pygments                  2.16.1                   pypi_0    pypi
python                    3.9.17               h955ad1f_0
python-dateutil           2.8.2                    pypi_0    pypi
python-slugify            8.0.1                    pypi_0    pypi
pyyaml                    6.0.1                    pypi_0    pypi
readline                  8.2                  h5eee18b_0
requests                  2.31.0                   pypi_0    pypi
rich                      13.5.3                   pypi_0    pypi
setuptools                68.0.0           py39h06a4308_0
setuptools-scm            8.0.3                    pypi_0    pypi
sgmllib3k                 1.0.0                    pypi_0    pypi
showyourwork              0.3.1.dev35+gcadb408          pypi_0    pypi
six                       1.16.0                   pypi_0    pypi
soupsieve                 2.5                      pypi_0    pypi
sqlite                    3.41.2               h5eee18b_0
text-unidecode            1.3                      pypi_0    pypi
tk                        8.6.12               h1ccaba5_0
tomli                     2.0.1                    pypi_0    pypi
tqdm                      4.66.1                   pypi_0    pypi
typing-extensions         4.8.0                    pypi_0    pypi
tzdata                    2023c                h04d1e81_0
urllib3                   1.26.16                  pypi_0    pypi
wheel                     0.41.2           py39h06a4308_0
xz                        5.4.2                h5eee18b_0
zlib                      1.2.13               h5eee18b_0

Same error though:

Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Rules claiming more threads will be scaled down.
Traceback (most recent call last):
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/__init__.py", line 701, in snakemake
    success = workflow.execute(
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/workflow.py", line 1060, in execute
    logger.run_info("\n".join(dag.stats()))
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/dag.py", line 2191, in stats
    yield tabulate(rows, headers="keys")
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 2048, in tabulate
    list_of_lists, headers = _normalize_tabular_data(
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 1471, in _normalize_tabular_data
    rows = list(map(lambda r: r if _is_separating_line(r) else list(r), rows))
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 1471, in <lambda>
    rows = list(map(lambda r: r if _is_separating_line(r) else list(r), rows))
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/tabulate/__init__.py", line 107, in _is_separating_line
    (len(row) >= 1 and row[0] == SEPARATING_LINE)
  File "/home/krosenfeld/.showyourwork/env/lib/python3.9/site-packages/snakemake/rules.py", line 1138, in __eq__
    return self.name == other.name and self.output == other.output
AttributeError: 'str' object has no attribute 'name'

My ~/.condarc:

channels:
  - defaults
  - conda-forge
channel_priority: strict
mathren commented 1 year ago

mmh.. I have successfully re-build locally a commit that github struggles with, apparently because of different conda versions. What are you using?

with conda=22.9.0, I can create the environment, activate it, pip install the correct shouwyourwork version, and then successfully building (with showyourwork downloading the datasets from zenodo as expected).

From a working environment, I created an updated environment using conda env export, see https://github.com/mathren/CE_accretors/blob/debug/environment.yml.

Can you try building a conda environment from that file, pip-install showyourwork, and build?

mathren commented 1 year ago

The commit I can locally build (but github actions fails using a more recent conda version) is on the branch debug, https://github.com/mathren/CE_accretors/commit/34059fa5277a2de59664ccf2f52452fb6ecff731

krosenfeld-IDM commented 1 year ago

The conda version seems likely. I have tried versions 23.5.2 and 23.3.1 and the updated environment you provided. All result in that same AttributeError.

mathren commented 1 year ago

any chance you could try conda=22.9.0 ?

krosenfeld-IDM commented 1 year ago

That did not seem to work either. Here is what I am looking at: My version of CE_accretors:

git branch
* (HEAD detached at 34059fa)

my conda version:

 conda --version
conda 22.9.0

and my environment:

# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main
_openmp_mutex             5.1                       1_gnu
appdirs                   1.4.4                    pypi_0    pypi
arrow                     1.2.3                    pypi_0    pypi
beautifulsoup4            4.12.2                   pypi_0    pypi
binaryornot               0.4.4                    pypi_0    pypi
blas                      1.0                         mkl
ca-certificates           2023.08.22           h06a4308_0
cachecontrol              0.12.11                  pypi_0    pypi
certifi                   2023.7.22                pypi_0    pypi
chardet                   5.2.0                    pypi_0    pypi
charset-normalizer        3.2.0                    pypi_0    pypi
click                     8.1.7                    pypi_0    pypi
compare-workdir           2.0                      pypi_0    pypi
contourpy                 1.1.1                    pypi_0    pypi
cookiecutter              2.4.0                    pypi_0    pypi
cycler                    0.12.0                   pypi_0    pypi
distro                    1.8.0                    pypi_0    pypi
feedparser                6.0.10                   pypi_0    pypi
fonttools                 4.43.0                   pypi_0    pypi
idna                      3.4                      pypi_0    pypi
importlib-resources       6.1.0                    pypi_0    pypi
intel-openmp              2021.4.0          h06a4308_3561
jinja2                    3.1.2                    pypi_0    pypi
joblib                    1.1.0              pyhd3eb1b0_0
kiwisolver                1.4.5                    pypi_0    pypi
lastversion               3.3.2                    pypi_0    pypi
ld_impl_linux-64          2.38                 h1181459_1
libffi                    3.4.4                h6a678d5_0
libgcc-ng                 11.2.0               h1234567_1
libgfortran-ng            7.5.0               ha8ba4b0_17
libgfortran4              7.5.0               ha8ba4b0_17
libgomp                   11.2.0               h1234567_1
libstdcxx-ng              11.2.0               h1234567_1
lockfile                  0.12.2                   pypi_0    pypi
markdown-it-py            3.0.0                    pypi_0    pypi
markupsafe                2.1.3                    pypi_0    pypi
matplotlib                3.8.0                    pypi_0    pypi
mdurl                     0.1.2                    pypi_0    pypi
mkl                       2021.4.0           h06a4308_640
mkl-service               2.4.0            py39h7f8727e_0
mkl_fft                   1.3.1            py39hd3c417c_0
mkl_random                1.2.2            py39h51133e4_0
msgpack                   1.0.7                    pypi_0    pypi
ncurses                   6.4                  h6a678d5_0
numpy                     1.26.0                   pypi_0    pypi
openssl                   3.0.11               h7f8727e_2
packaging                 23.1                     pypi_0    pypi
pillow                    10.0.1                   pypi_0    pypi
pip                       23.2.1           py39h06a4308_0
pygments                  2.16.1                   pypi_0    pypi
pyparsing                 3.1.1                    pypi_0    pypi
python                    3.9.18               h955ad1f_0
python-dateutil           2.8.2                    pypi_0    pypi
python-slugify            8.0.1                    pypi_0    pypi
pyyaml                    6.0.1                    pypi_0    pypi
readline                  8.2                  h5eee18b_0
requests                  2.31.0                   pypi_0    pypi
rich                      13.5.3                   pypi_0    pypi
scipy                     1.7.1            py39h292c36d_2
setuptools                68.0.0           py39h06a4308_0
setuptools-scm            8.0.3                    pypi_0    pypi
sgmllib3k                 1.0.0                    pypi_0    pypi
showyourwork              0.3.1.dev35+gcadb408          pypi_0    pypi
six                       1.16.0             pyhd3eb1b0_1
soupsieve                 2.5                      pypi_0    pypi
sqlite                    3.41.2               h5eee18b_0
termcolor                 1.1.0                    pypi_0    pypi
text-unidecode            1.3                      pypi_0    pypi
tk                        8.6.12               h1ccaba5_0
tomli                     2.0.1                    pypi_0    pypi
tqdm                      4.66.1                   pypi_0    pypi
typing-extensions         4.8.0                    pypi_0    pypi
tzdata                    2023c                h04d1e81_0
urllib3                   1.26.16                  pypi_0    pypi
wheel                     0.41.2           py39h06a4308_0
xz                        5.4.2                h5eee18b_0
zipp                      3.17.0                   pypi_0    pypi
zlib                      1.2.13               h5eee18b_0

I appreciate your looking into this. It is not-critical from my perspective. Is this useful for you?

mathren commented 1 year ago

I wouldn't say "useful", since this is a wrapped up project on my side. But it is frustrating it is not working for you, and a good test of showyourwork. The error you find is always the same AttributeError?

krosenfeld-IDM commented 1 year ago

Yes - same error.