matsen / pplacer

Phylogenetic placement and downstream analysis
http://matsen.fredhutch.org/pplacer/
GNU General Public License v3.0
75 stars 18 forks source link

logging for voronoi #150

Closed matsen closed 13 years ago

matsen commented 13 years ago

Add a --log flag that specifies a CSV file that can be used for logging partial solutions for the voronoi algorithm. The columns for this CSV file should be

then the rest of the information about the partial solution (mv_dist, etc.).

This should be the list of partial solutions after culling.

I'm hoping that by plotting this table before and after passing through an internal node we can see some relations that will make it so we can avoid taking the complete cartesian product.