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matsen / pplacer

Phylogenetic placement and downstream analysis
http://matsen.fredhutch.org/pplacer/
GNU General Public License v3.0
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integration not converging on very wide alignments #197

Closed habnabit closed 12 years ago

habnabit commented 12 years ago

happens when running rppr infer on /shared/silo_researcher/Matsen_F/MatsenGrp/data/darling_concatenation/prep_refpkg/allgenomes_dna.refpkg

working on OH813_p_fasta/1-23967 (1/46)...
working on OH3738_p_fasta/1-22383 (2/46)...
gsl: qng.c:189: ERROR: failed to reach tolerance with highest-order rule
Default GSL error handler invoked.
gsl: qng.c:189: ERROR: failed to reach tolerance with highest-order rule
Default GSL error handler invoked.
Fatal error: exception Not_found
Raised at file "map.ml", line 118, characters 16-25
Called from file "src/batSet.ml", line 152, characters 37-58
Called from file "src/batSet.ml", line 152, characters 42-57
Called from file "src/batSet.ml", line 152, characters 42-57
Called from file "src/batSet.ml", line 152, characters 42-57
Called from file "src/batSet.ml", line 152, characters 42-57
habnabit commented 12 years ago

fixed by calling Gsl_error.init () in 2ecd22aafaf049973a8ca5f8787840c4780829f9