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matsen / pplacer

Phylogenetic placement and downstream analysis
http://matsen.fredhutch.org/pplacer/
GNU General Public License v3.0
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Fatal error: exception Placement.No_PP #220

Closed koadman closed 12 years ago

koadman commented 12 years ago

This is related to Issue #219. When running guppy squash --pp or guppy compress --pp or guppy rarefact --pp on the files linked in Issue #219, guppy reports the error: Fatal error: exception Placement.No_PP

Additionally, when running guppy rarefact without posterior probabilities, the lacking bark error message persists. guppy squash without --pp does appear to work now (thanks!!).

koadman commented 12 years ago

The above behavior is on code revision 576d02b

habnabit commented 12 years ago

This is related to Issue #219. When running guppy squash --pp or guppy compress --pp or guppy rarefact --pp on the files linked in Issue #219, guppy reports the error: Fatal error: exception Placement.No_PP

This just means that the placefile was generated without pplacer -p; that's the only way that posterior probabilities will be present in the placefile.

Additionally, when running guppy rarefact without posterior probabilities, the lacking bark error message persists. guppy squash without --pp does appear to work now (thanks!!).

I'll take a look at this again tomorrow morning. Last I checked, I was able to run rarefact without errors.

matsen commented 12 years ago

Thanks, Aaron-- perhaps we should put in a more informative error message.