rppr pdprune fails for 2 or 3 desired leaves

matsen / pplacer

Phylogenetic placement and downstream analysis

http://matsen.fredhutch.org/pplacer/

GNU General Public License v3.0

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rppr pdprune fails for 2 or 3 desired leaves #229

Closed matsen closed 12 years ago

matsen commented 12 years ago

E.g.

rhino2 posters/1203croi ‹master*› » rppr pdprune --leaves 2 in_1.tre
Uncaught exception: File "pdprune_src/ptree.ml", line 112, characters 12-18: Assertion failed
Fatal error: exception Assert_failure("pdprune_src/ptree.ml", 112, 12)
Raised at file "printexc.ml", line 71, characters 10-11
Called from file "", line 0, characters 0-0

on http://cl.ly/3L2e1O0w2y3O0Q1m3O1S/in_1.tre

matsen commented 12 years ago

PD pruning is probably going to get pruned from pplacer.