`rppr reroot` fails when sequences are missing taxonomy

matsen / pplacer

Phylogenetic placement and downstream analysis

http://matsen.fredhutch.org/pplacer/

GNU General Public License v3.0

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Closed cmccoy closed 12 years ago

cmccoy commented 12 years ago

If some sequences in a reference package are not taxonomically labeled, rppr reroot fails with:

rerooting at phylum
Uncaught exception: Failure("root not found")
Fatal error: exception Failure("root not found")

Example:

/home/matsengrp/working/cmccoy/plates1to4_refs.refpkg