matsen / pplacer

Phylogenetic placement and downstream analysis
http://matsen.fredhutch.org/pplacer/
GNU General Public License v3.0
75 stars 18 forks source link

Add `--always-include` flag to `rppr voronoi` and `vorotree` #246

Closed cmccoy closed 12 years ago

cmccoy commented 12 years ago

Similar to rppr pdprune, we should be able to specify a set of leaves that must be present in the solution. Each implementation will then search for the leaf set minimizing ADCL, subject to the constraint that it contains the specified leaves.

--always-include can just take a file to read leaf names from.