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matsen / pplacer

Phylogenetic placement and downstream analysis
http://matsen.fredhutch.org/pplacer/
GNU General Public License v3.0
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`--map-rejection` for pplacer #268

Closed habnabit closed 12 years ago

habnabit commented 12 years ago

If specified, each placement would have its classification evaluated against the MAP identity ratio. If the ratio is <99.7%, the classification must be bumped up its lineage until it is above the species rank; <99.5% must be above genus; etc.

matsen commented 12 years ago

Um, 99%, then 97%, etc. we do something smarter tomorrow.

Erick On Jul 19, 2012 5:42 PM, "Aaron Gallagher" < reply@reply.github.com> wrote:

If specified, each placement would have its classification evaluated against the MAP identity ratio. If the ratio is <99.7%, the classification must be bumped up its lineage until it is above the species rank; <99.5% must be above genus; etc.

Reply to this email directly or view it on GitHub: https://github.com/matsen/pplacer/issues/268

habnabit commented 12 years ago

This turned out to be a failed experiment, but there are still some useful commits to keep around.