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matsen / pplacer

Phylogenetic placement and downstream analysis
http://matsen.fredhutch.org/pplacer/
GNU General Public License v3.0
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Fatal error: exception Failure("Tax table broken: tax_id 1 had established parent 117570 but 117571 is claiming to be the parent.") #380

Open lpipes opened 1 year ago

lpipes commented 1 year ago

Hi,

I am getting this error when I try to run pplacer. I think it has something to do with the tax table that taxtastic generated but I'm not sure.

pplacer -c 0.refpkg/ combo.sto 
Running pplacer v1.1.alpha19-0-g807f6f3 analysis on combo.sto...
Found reference sequences in given alignment file. Using those for reference alignment.
Pre-masking sequences... sequence length cut from 319 to 315.
Warning: pplacer results make the most sense when the given tree is multifurcating at the root. See manual for details.
Determining figs... figs disabled.
Allocating memory for internal nodes... done.
Caching likelihood information on reference tree... done.
Pulling exponents... done.
Preparing the edges for baseball... done.
Uncaught exception: Failure("Tax table broken: tax_id 1 had established parent 117570 but 117571 is claiming to be the parent.")
Fatal error: exception Failure("Tax table broken: tax_id 1 had established parent 117570 but 117571 is claiming to be the parent.")

pplacer_error.zip