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matsengrp / cft

Clonal family tree
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Add cluster step likelihood scores to table views #103

Closed metasoarous closed 7 years ago

metasoarous commented 7 years ago

Likelihood scores for clustering steps could be helpful in determining which clusterings should be looked at for "good" internal node (ancestral) sequences, something @lauranoges and @psathyrella are looking at now.

psathyrella commented 7 years ago

great, she will definitely use this. In case you don't have them already, the info's in the regular partition files like this:

/fh/fast/matsen_e/processed-data/partis/kate-qrs-2016-09-09/new/seeds/QA255.006-Vh/Hs-LN2-5RACE-IgG/partition.csv

which, for instance, you can get with

./_datascripts/run.py partition --seed-partition --study kate-qrs --extra-str=new --dsets 1g --check

which'd output this:

p