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matsengrp / cft

Clonal family tree
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Selecting alternative clusters #9

Closed dawahs closed 7 years ago

dawahs commented 8 years ago

Occasionally the cluster given in the annotations file will not be the one we want.

We can easily get the sequences from the annotations file, but we do not have the naive sequence directly at-hand. We can get this from ./bin/partis --naive-vsearch --other-args, and the .log file has the function call used to generate the data, it will just take an intermediate rerunning of partis.

matsen commented 7 years ago

I think this is contained in #4? @dawahs , please close if so.

dawahs commented 7 years ago

Looks like it. Closed.