Closed dunleavy005 closed 6 years ago
@dunleavy005 Great! Excited to look through this! For starters though, would you please merge in master so that the ultimate/full changeset will be easier to see?
@dunleavy005 I'm pretty sure he means rebase on master!
Oy. Looks like we bungled this. I realize now that I didn't phrase that clearly. I meant merge master into amrit_dev, not merge amritdev into master --
@dunleavy005 I just reverted the merge. Would you please try to merge master into amrit_dev and create a new PR so that I can review? Sorry again for the confusion...
I've created the scons interface for ecgtheow based on our chalkboard diagram (https://matsengrp.slack.com/files/U031DHRSB/F9XB1H2CE/img_20180326_180054.jpg). It divides the pipeline into 3 steps: 1) input data creation, 2) inference, 3) post-processing.
1) incorporates both Kristian's simulator and available CFT data. 2) incorporates BEAST/RevBayes, Amrit/Not-Amrit corrected inferences. 3) always makes graphviz summary plots of the posterior trees, but also computes Chris's posterior accuracy statistics in
process_beast.py
in the case of simulated data.