matsengrp / gctree

GCtree: phylogenetic inference of genotype-collapsed trees
https://matsengrp.github.io/gctree
GNU General Public License v3.0
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Remove `S5F` contents and mark experimental features #110

Closed willdumm closed 1 year ago

willdumm commented 1 year ago

In order to avoid misleading users about new experimental ranking criteria (mutability and isotype parsimony), this PR does these things:

We now expect comma-separated, unquoted mutability and substitution files, where before we expected tab-separated, quoted files. This PR still allows loading files in the old format, but only the new format is mentioned in the docs, so as soon as this PR is merged, the docs will tell lies about the most recent gctree release, until this PR makes it into a new release.