A minor fix to avoid computing mutabilities using 5-mers which contain non-contiguous nucleotides (that is, in situations where --chain_split option would be provided).
This will change the computed mutability parsimony score when there are mutations within two bases of the chain_split site.
A minor fix to avoid computing mutabilities using 5-mers which contain non-contiguous nucleotides (that is, in situations where
--chain_splitoption would be provided).This will change the computed mutability parsimony score when there are mutations within two bases of the
chain_splitsite.