Closed willdumm closed 2 years ago
Inspired by:
number of trees with integer branch lengths: 396
Isotype parsimony will be used as a ranking criterion
Mutation model parsimony will be used as a ranking criterion
Traceback (most recent call last):
File "/opt/miniconda3/bin/gctree", line 8, in <module>
sys.exit(main())
File "/opt/miniconda3/lib/python3.9/site-packages/gctree/cli.py", line 734, in main
args.func(args)
File "/opt/miniconda3/lib/python3.9/site-packages/gctree/cli.py", line 202, in infer
trimmed_forest, _ = forest.filter_trees(
File "/opt/miniconda3/lib/python3.9/site-packages/gctree/branching_processes.py", line 916, in wrapper
return func(self, *args, **kwargs)
File "/opt/miniconda3/lib/python3.9/site-packages/gctree/branching_processes.py", line 1174, in filter_trees
mut_funcs = _mutability_dagfuncs(
File "/opt/miniconda3/lib/python3.9/site-packages/gctree/mutation_model.py", line 432, in _mutability_dagfuncs
@hdag.utils.ignore_ualabel(0)
AttributeError: module 'historydag.utils' has no attribute 'ignore_ualabel'
Fixes incomplete refactor in #91 after upgrade to
historydag v1
, and adds a test that runs inference with all criteria via the cli.