This PR provides a way to adjust node support estimates based on a per-node confidence index computed from the frequency of mutations on that node's parent edge. It also provides compact genome methods which are equivalent to converting between full alignments and alignments only containing variant sites.
This PR provides a way to adjust node support estimates based on a per-node confidence index computed from the frequency of mutations on that node's parent edge. It also provides compact genome methods which are equivalent to converting between full alignments and alignments only containing variant sites.