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matsengrp
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historydag
https://matsengrp.github.io/historydag
GNU General Public License v3.0
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working tests and implementation
#34
willdumm
closed
2 years ago
0
Suboptimal Trimming
#33
willdumm
closed
2 years ago
1
Sankoff filtering cleanup
#32
marybarker
closed
2 years ago
0
squashed commits from node-utils branch
#31
willdumm
closed
2 years ago
0
Node support annotation squashed
#30
willdumm
closed
2 years ago
0
Node support annotation
#29
willdumm
closed
2 years ago
0
Node utils
#28
willdumm
closed
2 years ago
1
Do Sankoff on the history DAG
#27
willdumm
closed
1 year ago
1
Agg mut staging
#26
williamhowardsnyder
closed
1 year ago
0
Consistent Clade Ordering
#25
willdumm
closed
2 years ago
0
make `trim_optimal_weight` update parents
#24
willdumm
closed
2 years ago
0
21 Fix Names
#23
willdumm
closed
2 years ago
1
Wd-determinism
#22
willdumm
closed
2 years ago
0
Fix old method names using names from parsimony-plateau paper
#21
willdumm
opened
2 years ago
0
Wd topologies explore
#20
willdumm
closed
2 years ago
0
implemented node counting alg + added small tests
#19
williamhowardsnyder
closed
2 years ago
0
V1 docs changes
#18
willdumm
closed
2 years ago
0
Infrastructure to invite exploration
#17
matsen
closed
2 years ago
1
Bound trimming after single edge addition to the history DAG
#16
matsen
closed
2 years ago
2
(intern) Trimming within a percentage of the best weight
#15
matsen
closed
1 year ago
2
Indexing Histories
#14
clarisw
closed
2 years ago
1
Update docs and readme for PR #12
#13
willdumm
opened
2 years ago
1
Supertrees
#12
willdumm
closed
2 years ago
0
move docs
#11
willdumm
closed
2 years ago
0
8 more efficient merging
#10
williamhowardsnyder
closed
2 years ago
1
fix typo in utils.hamming_distance_countfuncs
#9
willdumm
closed
2 years ago
0
Faster hDAG construction
#8
willdumm
opened
2 years ago
1
Characterize variety of histories in the history DAG
#7
willdumm
opened
2 years ago
2
In-DAG tree search
#6
willdumm
opened
2 years ago
0
Efficient sequence/mutation storage
#5
willdumm
closed
1 year ago
0
Allow histories with different leaf sets in the same DAG
#4
willdumm
closed
2 years ago
1
Indexing histories
#3
willdumm
closed
1 year ago
3
Move docs to separate branch
#2
willdumm
closed
2 years ago
0
Cleanup
#1
willdumm
closed
2 years ago
0
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