Re-factor the config setup.

matsengrp / phip-flow

A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

MIT License

9 stars 6 forks source link

Re-factor the config setup. #15

Closed jgallowa07 closed 3 years ago

jgallowa07 commented 3 years ago

Right now I have to link each seq_dir factor in the sample metadata to the full path where that dir actually is in the config file. This is confusing and tedious. Instead let's make a requirement that each seq_dir factor to exist in ${baseDir}/NGS. As a symbolic link or in reality.