adds phip_simulator.py which is a tool to simulate a phip dataset (sample metadata, peptide metadata, and fastq files for all samples) given an expected counts matrix. This will allow us to create flexible testing datasets where we know the expected outcome
adds the (mostly empty) files needed to run a local nextflow pipeline.
adds one simulated test set with 10 samples and 10 peptides with reads in fastq files expected to have one alignment per sample-peptide pair.
This PR:
phip_simulator.pywhich is a tool to simulate a phip dataset (sample metadata, peptide metadata, and fastq files for all samples) given an expected counts matrix. This will allow us to create flexible testing datasets where we know the expected outcome