matsengrp / phip-flow

A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
MIT License
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Add input checks #30

Closed jgallowa07 closed 1 year ago

jgallowa07 commented 3 years ago

Add a process which checks for:

  1. the input table for specific columns necessary or running the workflow specified by the parameters provided in the config file. The column names it looks for are configures by the column name config file. (which also must be completed).

  2. Checks that all the filepaths in the sample table exist and throw useful errors that don't.