Deprecate or Remove Negative Binomial workflow - Githubissues

matsengrp / phip-flow

A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

MIT License

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Deprecate or Remove Negative Binomial workflow #58

Closed jgallowa07 closed 1 year ago

jgallowa07 commented 1 year ago

We've decided that there is no more reason to maintain the Neg. Binomial workflow -- so it needs to either be deprecated (with a warning) or removed completely. I'm leaning towards the latter

TODO

[x] Remove the NegBinom code from phippery
[x] Remove the workflow processes relevant to NegBinom in the pipeline
[x] Remove the relevant documentation for NB
[ ] Update phippery version
[ ] Update phip-flow version