Closed matsen closed 5 years ago
Actually, test-extras.txt is made by the split-repertoires utility.
Updated protocol:
python util.py split-repertoires --out-prefix $PWD/_ignore/deneuter-$(date -I) --test-size 0.333333333333333 $(fd .tsv /fh/fast/matsen_e/data/adaptive-deneuter)
scons --data=$PWD/_ignore/deneuter-2019-02-07.json -j 75 --clusters=beagle
Right now to run for a new data set one needs to
Make a
test-with-extras.txt
file so that we can compare test and train. Add relevant targets to the SConscript Run likescons --data=deneuter-train --test=deneuter-test-extras -j 100 --clusters=beagle
Now on laptop:
Run like
scons --data=deneuter-train --test=deneuter-test -j 100 --clusters=beagle
so we only aggregate the test samples. ThenWhat a mess.